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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
THCA cis rs2275426 1 rs4660319 chr1:46341623 GPBP1L1 chr1:46092978-46152302:- 0.16 4.06 5.77E-5 Body mass index
THCA cis rs2275426 1 rs4660319 chr1:46341623 MMACHC chr1:45965856-45976737:+ -0.2 -4.32 1.87E-5 Body mass index
THCA cis rs2275426 1 rs4660319 chr1:46341623 MUTYH chr1:45794915-45806142:- 0.31 8.43 4.17E-16 Body mass index
THCA cis rs2275426 1 rs4660321 chr1:46366760 CCDC163P chr1:45960581-45965646:- -0.51 -10.11 6.85E-22 Body mass index
THCA cis rs2275426 1 rs4660321 chr1:46366760 GPBP1L1 chr1:46092978-46152302:- 0.16 4.04 6.11E-5 Body mass index
THCA cis rs2275426 1 rs4660321 chr1:46366760 MMACHC chr1:45965856-45976737:+ -0.2 -4.41 1.3E-5 Body mass index
THCA cis rs2275426 1 rs4660321 chr1:46366760 MUTYH chr1:45794915-45806142:- 0.31 8.54 1.77E-16 Body mass index
THCA cis rs4660456 1 rs4660456 chr1:41239511 LOC100130557 chr1:41154752-41157933:- 0.22 5.61 3.51E-8 Platelet count
THCA cis rs4660456 1 rs4660456 chr1:41239511 NFYC chr1:41157242-41237273:+ -0.23 -6.28 7.49E-10 Platelet count
THCA cis rs4660306 1 rs4660870 chr1:45995231 CCDC163P chr1:45960581-45965646:- -1.01 -26.66 1.22E-96 Homocysteine levels
THCA cis rs4660306 1 rs4660870 chr1:45995231 MUTYH chr1:45794915-45806142:- 0.2 4.88 1.43E-6 Homocysteine levels
THCA cis rs4660306 1 rs4660870 chr1:45995231 PRDX1 chr1:45976708-45987609:- -0.38 -9.83 6.82E-21 Homocysteine levels
THCA cis rs2275426 1 rs4660898 chr1:46402171 CCDC163P chr1:45960581-45965646:- -0.52 -10.14 5.21E-22 Body mass index
THCA cis rs2275426 1 rs4660898 chr1:46402171 GPBP1L1 chr1:46092978-46152302:- 0.15 3.83 0.000146 Body mass index
THCA cis rs2275426 1 rs4660898 chr1:46402171 MMACHC chr1:45965856-45976737:+ -0.21 -4.57 6.3E-6 Body mass index